About

Welcome to First Wave Discovery.

First Wave Discovery is a scientific consulting practice focused on target identification, translational biology, and early drug discovery.

Matthew Guenther, Ph.D., is a biotechnology scientist and consultant with 12 years of industry experience leading target identification, functional genomics, translational biology, and early drug discovery programs. His career has spanned the Whitehead Institute/MIT, Bristol Myers Squibb, Syros Pharmaceuticals, and Marlinspike Therapeutics, where he has helped discover therapeutic targets, build genomics and functional genomics platforms, and advance precision oncology and rare disease programs from biological hypothesis through preclinical development.

Today, we partner with biotechnology companies, investors, and emerging startups to evaluate therapeutic opportunities, strengthen scientific strategy, and reduce development risk. Our consulting focuses on target identification and validation, scientific due diligence, translational biology, biomarker strategy, drug discovery platform development, small-molecule discovery, and helping organizations generate the decision-quality data needed to make confident portfolio and investment decisions.

Publications and Patents
Approach

Discovery philosophy & strategy.

Building successful biotechnology companies begins by linking disease biology, target selection, and predicted patient outcomes using biologically relevant models, while maintaining clear communication and alignment across scientific teams, CROs, and key stakeholders. Equally important is generating the decision-quality data and scientific narrative needed to support executive decision-making, strategic partnerships, and investor confidence.

Domains of Expertise

Where the practice runs deep.

01

Genomics, Functional Genomics, and NGS

  • Design integrated genomics and functional genomics strategies for target discovery and mechanism-of-action studies.
  • Integrate transcriptomic, proteomic, and genetic perturbation datasets to generate biological insight.
  • Develop scalable multi-omic platforms, quality systems, and reproducible research workflows.
  • Apply CRISPR and next-generation sequencing technologies to interrogate disease biology.
02

Target Identification and Validation

  • Evaluate therapeutic targets using genetic, epigenomic, and functional evidence.
  • Develop biomarker and patient selection strategies to support precision medicine.
  • Guide target progression from biological rationale through lead optimization.
  • Generate decision-quality data to inform portfolio prioritization and go/no-go decisions.
03

Translational Biology and Biomarkers

  • Design translational strategies linking target biology to clinical hypotheses.
  • Develop pharmacodynamic biomarkers and target engagement assays.
  • Establish genetically informed patient selection strategies.
  • Integrate PK/PD, transcriptomic, and proteomic data to guide program advancement.
04

Drug Discovery Platform Development

  • Build biology organizations and discovery platforms for emerging biotechnology companies.
  • Design integrated assay cascades spanning biochemical, cellular, and genomic endpoints.
  • Establish scalable research infrastructure, operational workflows, and external collaborations.
  • Support platform strategy that enables partnerships, financing, and portfolio growth.
05

Scientific Due Diligence and Portfolio Strategy

  • Evaluate target biology, therapeutic rationale, and competitive landscape.
  • Assess scientific risk, translational feasibility, and development strategy.
  • Deliver strategic recommendations that inform portfolio and investment decisions.
  • Translate complex biological data into clear, actionable scientific guidance.
06

Precision Oncology

  • Advance precision oncology programs grounded in human genetics and disease biology.
  • Develop biomarker-driven strategies for patient selection and clinical translation.
  • Apply expertise in synthetic lethality, RNA biology, and targeted therapeutics.
  • Bridge discovery biology with translational science to accelerate therapeutic development.

Looking for a senior collaborator on drug discovery biology?

Discovery, target ID, translational, and project management. Lexington, MA.

Get in touch